Dear Othniel Harris,
I think that you can change the position of menu in the layout file.
Example: main-left-right.xml => go to "templates\sj_plus\layouts\main-left-right.xml", finding:
<header html5tag="header" order="1" id="yt_header" autosize="0">
<positions>
<position class="span3" data-tablet="span4" type="feature">@logo</position>
<position class="span3" data-tablet="span4" data-mobile="span4" style="none" type="modules">social</position>
<position class="span3" data-tablet="hidden" data-mobile="hidden" style="none" type="modules">search</position>
<position class="span3" data-tablet="span4" data-mobile="hidden" style="none" type="modules">contact</position>
</positions>
</header>
<menu html5tag="section" order="2" id="yt_menuwrap">
<positions>
<position class="span12" type="feature">@menu</position>
</positions>
</menu>
=>
<menu html5tag="section" order="1" id="yt_menuwrap">
<positions>
<position class="span12" type="feature">@menu</position>
</positions>
</menu>
<header html5tag="header" order="2" id="yt_header" autosize="0">
<positions>
<position class="span3" data-tablet="span4" type="feature">@logo</position>
<position class="span3" data-tablet="span4" data-mobile="span4" style="none" type="modules">social</position>
<position class="span3" data-tablet="hidden" data-mobile="hidden" style="none" type="modules">search</position>
<position class="span3" data-tablet="span4" data-mobile="hidden" style="none" type="modules">contact</position>
</positions>
</header>
Thanks